Advanced Tuberculosis Diagnostic Research, 2011

An intensive, high-level course on TB diagnostic research methods

Course Slides

Day 1 (5 July 2011)

The global value chain for TB diagnostics and current pipeline - M Pai [Download]
Value chain in action: Xpert MTB/RIF - C Boehme [Download]
Value chain in action: Serological tests - M Pai [Download]
Types of diagnostic designs and landscape of TB dx research - M Pai [Download]
Avoiding optimism bias - M Pai [Download]
The architecture of demonstration studies - C Boehme [Download]
Incremental value of new diagnostics: an overview - M Pai [Download]
Incremental value: case study 1: IGRAs in HIV+ patients - M Rangaka [Download]
Incremental value: case study 2: IGRAs in low incidence setting - J Metcalfe [Download]

Day 2 (6 July 2011)

Impact of test results on diagnostic thinking and clinical decisions: an overview - M Pai [Download]
Diagnostic thinking impact: case study 1: IGRAs in children - D Ling [Download]
Diagnostic thinking impact: case study 2: Cultures - P Hepple [Download]
Reference standards: Brief presentations & panel discussion
-- Microscopy studies - A Cattamanchi [Download]
-- Molecular assays - C Boehme [Download]
-- IGRAs - D Menzies [Download]
-- Pediatric TB - S Graham [Download]
-- Extrapulmonary TB - J Peter [Download]
Statistical approaches to imperfect reference standards (latent class analyses and other approaches) - N Dendukuri [Download]
Evaluation of NAATs in the absence of a perfect gold-standard test: statistical and epidemiologic issues - N Dendukuri [Download]
Impact on patient outcomes: intro to diagnostic RCTs - M Pai [Download]
Diagnostic RCTs: case study 1: Summary of TB Dx RCTs - J Metcalfe [Download]
Diagnostic RCTs: case study 2: Xpert MTB/RIF - J Peter [Download]

Day 3 (7 July 2011)

Systematic reviews: an introduction - M Pai [Download]
Systematic reviews of diagnostic accuracy - K Steingart [Download]
SR: case study 1: Serological tests for TB - K Steingart [Download]
SR: case study 2: Predictive value of IGRAs - M Rangaka [Download]
SR: case study 3: IGRAs in healthcare workers - A Zwerling [Download]
Converting ideas into commercially viable products - V Jonas [Download]
Guideline development in TB diagnostics - K Steingart [Download]
IGRA guidelines: concordance, discordance or confusion? - C Denkinger [Download]
Operational and implementation research: an overview - M Pai [Download]
Implementation research: case study 1: Improving case detection in Uganda - A Cattamanchi [Download]
Implementation research: case study 2: Urine-based diagnostics - E Talbot [Download]
Implementation research: case study 3: Value of MODS in a high prevalence setting - S Schumacher [Download]

Day 4 (8 July 2011)

Modeling of TB diagnostics: Introduction - O Oxlade [Download]
Mathematical modeling of TB interventions: review of key papers in the field - O Oxlade [Download]
Modeling TB diagnostics: historical perspective and current state of the science - D Dowdy [Download]
Modeling TB diagnostics: challenges and future directions - D Dowdy [Download]
Cost-effectiveness analysis: Introduction - H Sohn [Download]
Costing of TB diagnostics - H Sohn & O Oxlade [Download]
Methods for conducting individual-level cost-effectiveness analysis - H Sohn [Download]
Cost-effectiveness analysis of TB diagnostics: challenges and future directions - D Dowdy [Download]
Getting your study published! - J Clark [Download]


Course Description [Link]

Context

High quality diagnostic studies are critical to evaluate new tools, to develop evidence-based policies on TB diagnostics. There is evidence that TB diagnostic trials are poorly conducted and poorly reported. Lack of methodologic rigour in TB trials is a cause for concern as it may prove to be a major hurdle for effective application of diagnostics in TB care and control. Furthermore, there is evidence that a majority of TB diagnostic studies are focused on test accuracy. There are limited data on outcomes such as accuracy of diagnostic algorithms (rather than single tests) and their relative contributions to the health care system, incremental value of new tests, impact of new tests on clinical decision-making and therapeutic choices, cost-effectiveness in routine programmatic settings, and impact on patient-important outcomes. This poses problems because research on test accuracy, while necessary, is not sufficient for policy and guideline development. Test accuracy data are surrogates for patient-important outcomes and cannot provide high quality evidence for policy making. Therefore, accuracy studies must be considered along with impact of the test on patient-important outcomes, and other factors such as quality of the evidence, the uncertainty about values and preferences associated with the tests and presumed impact on patient-important outcomes, and cost and feasibility. Translation of policy into impact requires collecting evidence for scale-up, country-level data on cost-effectiveness and feasibility, implementation research, and local decisions on scale-up, delivery and impact assessment.

Course content

This advanced course will cover the principles behind diagnostic research, diagnostic study designs, sources of bias, and value chain for TB diagnostics development. Also, critical appraisal of diagnostic studies, and conventional and advanced methods for systematic reviews (meta-analyses) of diagnostic tests will be presented, along with the GRADE approach to diagnostic policies. More recently, there is growing appreciation that "test accuracy research" focused on sensitivity and specificity is not necessarily the same as "diagnostic research." There is also a clearly felt need to go beyond test accuracy and evaluate accuracy of diagnostic algorithms (rather than single tests) and their relative contributions to the health care system, incremental value of new tests, impact of new tests on clinical decision-making and therapeutic choices, cost-effectiveness in routine programmatic settings, and impact on patient-important outcomes. This course will introduce multivariable approaches to diagnostic research, and cover alternative designs which evaluate patient outcomes, including the diagnostic RCT, and implementation research. The course will also cover latent class analysis, mathematical modelling, costing and cost-effectiveness studies. Computer demonstrations will be an integral component of this course.

Objectives

By the end of the course, participants will understand:
• the value chain for TB diagnostics development, current pipeline of TB diagnostics, and WHO policies on new diagnostics
• principles and practice of diagnostic research focused on accuracy of tests
• principles of multivariable approaches to diagnostic research, and adjustment for imperfect reference standards
• principles of meta-analyses of diagnostic accuracy studies and GRADE approach to diagnostic policies
• principles of alternative designs to evaluate impact of new tests on clinical decision-making, therapeutic choices, and patient-important outcomes
• principles of implementation research, collecting evidence for scale-up, cost-effectiveness analyses and modelling studies in TB diagnostics